From 01bf69177d4f8e192f8fc756f49bc2cbb6084614 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 16 Jan 2024 22:36:39 +0100
Subject: [PATCH] import/cran: Add more invalid package names and translations.

These were encountered in a mass import of Bioconductor packages.

* guix/import/cran.scm (invalid-packages): Add "rtools".
(transform-sysname): Add aliases for Python and bioinformatics packages.

Change-Id: I97e13cee10c2ee85d4b9296d91afccbdbcec4946
---
 guix/import/cran.scm | 11 +++++++++++
 1 file changed, 11 insertions(+)

diff --git a/guix/import/cran.scm b/guix/import/cran.scm
index 5995e6a5ce..6eddcbfb7b 100644
--- a/guix/import/cran.scm
+++ b/guix/import/cran.scm
@@ -412,6 +412,7 @@ (define invalid-packages
         "linux"
         "libR"
         "none"
+        "rtools"
         "unix"
         "windows"
         "xcode"
@@ -429,6 +430,9 @@ (define (transform-sysname sysname)
     ("freetype2" "freetype")
     ("gettext" "gnu-gettext")
     ("gmake" "gnu-make")
+    ("h5py" "python-h5py")
+    ("hmmer3" "hmmer")
+    ("leidenalg" "python-leidenalg")
     ("libarchive-devel" "libarchive")
     ("libarchive_dev" "libarchive")
     ("libbz2" "bzip2")
@@ -445,10 +449,17 @@ (define (transform-sysname sysname)
     ("libz-dev" "zlib")
     ("mariadb-devel" "mariadb")
     ("mysql56_dev" "mariadb")
+    ("nodejs" "node")
+    ("numpy" "python-numpy")
     ("openssl-devel" "openssl")
     ("openssl@1.1" "openssl-1.1")
+    ("pandas" "python-pandas")
     ("pandoc-citeproc" "pandoc")
     ("python3" "python-3")
+    ("pytorch" "python-pytorch")
+    ("scikit-learn" "python-scikit-learn")
+    ("scipy" "python-scipy")
+    ("sklearn" "python-scikit-learn")
     ("sqlite3" "sqlite")
     ("svn" "subversion")
     ("tcl/tk" "tcl")