gnu: Add casacore.
* gnu/packages/astronomy.scm (casacore): New variable. Modules sorted alphabetically to ease maintannce. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
This commit is contained in:
Sharlatan Hellseher
Ludovic Courtès
parent
d651f28017
commit
000b710cee
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@ -26,18 +26,15 @@
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;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
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(define-module (gnu packages astronomy)
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#:use-module (guix packages)
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#:use-module ((guix licenses) #:prefix license:)
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#:use-module (guix download)
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#:use-module (guix git-download)
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#:use-module (guix utils)
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#:use-module (gnu packages)
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#:use-module (gnu packages algebra)
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#:use-module (gnu packages autotools)
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#:use-module (gnu packages bison)
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#:use-module (gnu packages boost)
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#:use-module (gnu packages check)
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#:use-module (gnu packages compression)
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#:use-module (gnu packages curl)
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#:use-module (gnu packages flex)
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#:use-module (gnu packages fontutils)
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#:use-module (gnu packages gcc)
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#:use-module (gnu packages gettext)
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@ -49,16 +46,19 @@ (define-module (gnu packages astronomy)
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#:use-module (gnu packages libusb)
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#:use-module (gnu packages lua)
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#:use-module (gnu packages maths)
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#:use-module (gnu packages ncurses)
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#:use-module (gnu packages netpbm)
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#:use-module (gnu packages perl)
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#:use-module (gnu packages pkg-config)
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#:use-module (gnu packages pretty-print)
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#:use-module (gnu packages python)
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#:use-module (gnu packages python-check)
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#:use-module (gnu packages python-crypto)
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#:use-module (gnu packages python-science)
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#:use-module (gnu packages python-web)
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#:use-module (gnu packages python-xyz)
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#:use-module (gnu packages qt)
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#:use-module (gnu packages readline)
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#:use-module (gnu packages time)
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#:use-module (gnu packages version-control)
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#:use-module (gnu packages video)
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@ -66,9 +66,15 @@ (define-module (gnu packages astronomy)
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#:use-module (gnu packages xiph)
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#:use-module (gnu packages xml)
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#:use-module (gnu packages xorg)
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#:use-module (gnu packages)
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#:use-module (guix build-system cmake)
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#:use-module (guix build-system gnu)
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#:use-module (guix build-system python)
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#:use-module (guix download)
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#:use-module (guix gexp)
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#:use-module (guix git-download)
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#:use-module (guix packages)
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#:use-module (guix utils)
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#:use-module (ice-9 match)
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#:use-module (srfi srfi-1))
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@ -107,6 +113,93 @@ (define-public calceph
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@end itemize\n")
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(license license:cecill)))
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(define-public casacore
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(package
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(name "casacore")
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(version "3.4.0")
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(source
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(origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/casacore/casacore")
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(commit (string-append "v" version))))
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(sha256
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(base32
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"05ar5gykgh4dm826xplj5ri5rw7znhxrvin2l67a3mjwfys7r2a0"))
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(file-name (git-file-name name version))))
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(build-system cmake-build-system)
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(arguments
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(list
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;; Note: There are multiple failures in
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;; tests which require additional measures data. They are
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;; distributed via FTP without any license:
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;; ftp://ftp.astron.nl/outgoing/Measures/
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;; TODO: Check how to fix tests.
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#:tests? #f
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#:parallel-build? #t
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#:configure-flags
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#~(list "-DBUILD_PYTHON3=ON"
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"-DBUILD_PYTHON=OFF"
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"-DBUILD_TESTING=TRUE"
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"-DUSE_HDF5=ON"
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"-DUSE_OPENMP=OFF"
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"-DUSE_THREADS=ON"
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(string-append "-DDATA_DIR=" #$output "/data")
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(string-append "-DPYTHON3_EXECUTABLE="
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#$(this-package-input "python") "/bin")
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(string-append "-DPYTHON3_INCLUDE_DIR="
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#$(this-package-input "python") "/include")
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(string-append "-DPYTHON3_LIBRARY="
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#$(this-package-input "python") "/lib"))
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#:phases
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#~(modify-phases %standard-phases
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(add-after 'unpack 'set-env
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(lambda _
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(setenv "HOME" "/tmp")))
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(add-after 'unpack 'use-absolute-rm
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(lambda* (#:key inputs #:allow-other-keys)
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(substitute* "casa/OS/test/tFile.run"
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(("/bin/rm")
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(search-input-file inputs "/bin/rm")))))
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(add-after 'unpack 'use-absolute-python3
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(lambda _
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(substitute* "build-tools/casacore_floatcheck"
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(("#!/usr/bin/env python")
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(string-append "#!" (which "python3"))))))
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;; NOTE: (Sharlatan-20220611T200837+0100): Workaround for casacore
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;; tests stuck with missing "qsub" issue.
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;; https://github.com/casacore/casacore/issues/1122
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(add-after 'unpack 'patch-pre-test-checks
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(lambda _
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(substitute* "build-tools/casacore_assay"
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(("QSUBP=.*$") "QSUBP=\n")
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(("YODP=.*$") "YODP=\n")))))))
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(native-inputs
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(list bison
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boost
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flex
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readline))
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(inputs
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(list cfitsio
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fftw
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fftwf
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gfortran
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hdf5
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lapack
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ncurses
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openblas
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python
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python-numpy
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wcslib))
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(home-page "http://casacore.github.io/casacore/")
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(synopsis "Suite of C++ libraries for radio astronomy data processing")
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(description
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"The casacore package contains the core libraries of the old
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AIPS++/CASA (Common Astronomy Software Application) package. This split was
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made to get a better separation of core libraries and applications.
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@url{https://casa.nrao.edu/, CASA} is now built on top of Casacore.")
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(license license:gpl2+)))
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(define-public cfitsio
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(package
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(name "cfitsio")
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